Publications

^# co-first author; * co-coresponding author.

2024

Xiaoyu Ruan, Yundong Xiong, Xiaoman Li*, Ence Yang*, Jiadong Wang*. Lower ratio of IMPDH1 to IMPDH2 sensitizes gliomas to chemotherapy. Cancer Gene Therapy, 2024.06.13, https://doi.org/10.1038/s41417-024-00793-5. (IF₂₀₂₃ 4.8)
Minghao Du^#, Changyu Tao^#, Xueyan Hu, Yun Zhang, Jun Kan, Juan Wang, Ence Yang*. Unraveling the dynamic transcriptomic changes during the dimorhic transition of Talaromyces marneffei through time-course analysis. Frontiers in Microbiology, 2024.04.24, 15:1369349. (IF₂₀₂₃ 4.0)

Chen Nie^#, Xiao Albert Zhou^#, Jiadong Zhou, Zelin Liu, Yangyang Gu, Wanchang Liu, Jun Zhan, Shiwei Li, Yundong Xiong, Mei Zhou, Qinjian Shen, Weibin Wang, Ence Yang*, Jiadong Wang*. A transcription-independent mechanism determines rapid periodic fluctuations of BRCA1 expression. EMBO Journal, 2023.08.01, 42: e111951. (IF₂₀₂₃ 9.4)
Guangyi He^#, Maiyue Chen^#, Yingnan Bian, Ence Yang*. MTM: a multi-task learning framework to predict individualized tissue gene expression profiles. Bioinformatics, 2023.06.05, 39(6): btad363. (IF₂₀₂₃ 4.4)
Xueyan Hu, Jie Zhao, Junhui Zhao, Ence Yang*, Mozhi Jia*. Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses. Parasites & Vectors, 2023.01.30, 16:40 (IF₂₀₂₃ 3.0)

Jianqi She^#, Minghao Du^#, Zhanzhan Xu, Yueqi Jin, Yu Li, Daoning Zhang, Changyu Tao, Jian Chen, Jiadong Wang, Ence Yang*. The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites. Genome Biology, 2022.11.03, 23:231. (IF₂₀₂₂ 12.3) [full text]
Zelin Liu^#, Huiru Ding#, Jianqi She, Chunhua Chen, Weiguang Zhang*, Ence Yang*. DEBKS: a tool to detect differentially expressed circular RNAs. Genomics, Proteomics & Bioinformatics, 2022.06.28, 22:549-556. (IF₂₀₂₂ 9.5) [full text]
Zelin Liu, Ence Yang*. circFL-seq, a full-length circRNA sequencing method. Bio-Protocol, 2022.04.20, 12(8):e4384. (IF₂₀₂₂ 0.8) [full text]
Xueyan Hu, Yun Zhang, Minghao Du, Ence Yang*. Efficient and specific DNA oligonucleotide rRNA probe-based rRNA removal in Talaromyces marneffei. Mycology, 2022.04.03, 13(2):106-118. (IF₂₀₂₂ 4.2) [full text]
Guangyi He, Liming Xiao, Yingnan Bian*, Ence Yang*. (2022). Genome-wide feature selection of robust mRNA biomarkers for body fluid identification. In: Ying Tan, Yuhui Shi. (eds) Data Mining and Big Data. DMBD 2022. Communications in Computer and Information Science, vol 1745. Springer, Singapore.

2021

Zelin Liu, Changyu Tao, Shiwei Li, Minghao Du, Yongtai Bai, Xueyan Hu, Yu Li, Jian Chen, Ence Yang*. circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing. eLife, 2021.10.14, 10:e69457. (IF₂₀₂₁ 8.713) [full text]
Xiangmei Zhang^#*, Xueyan Hu^#, Saad Jan, Syed Majid Rasheed, Yun Zhang, Minghao Du, Ence Yang. Development of CRISPR-Cas9 genome editing system in Talaromyces marneffei. Microbial Pathogenesis, 2021.05, 154:104822. (IF₂₀₂₁ 3.848) [full text]
胡雪嫣, 张赟, 杨恩策, 杜明昊*. 真菌环状RNA鉴定及研究展望. 菌物学报, 40(9):2215-2222. // Xueyan Hu, Yun Zhang, Ence Yang, Minghao Du*. CircRNA in fugi: identification procedure and research perspective. Mycosystema, 2021.09.22, 40(9):2215-2222. [full text]

Before 2020

Zelin Liu, Yuan Ran, Changyu Tao, Sichen Li, Jian Chen, Ence Yang*. Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex. Genome Biology, 2019.05.20, 20:99. (IF₂₀₁₉ 10.806) [full text]
Qiangyi Wang, Minghao Du, Shuai Wang, Linxia Liu, Liming Xiao, Linqi Wang, Tong Li*, Hui Zhuang*, Ence Yang*. MADS-box transcription factor madsA regulates dimorphic transition, conidiation, and germination of Talaromyces marneffei. Frontiers in Microbiology, 2018.08.07, 9:1781. (IF₂₀₁₈ 4.259) [full text]
Yizhang Zhu, Likun Wang, Yuxin Yin*, Ence Yang*. Systematic analysis of gene expression patterns associated with postmortem interval in human tissues. Scientific Reports, 2017.07.14, 7:5435. (IF₂₀₁₇ 4.122) [full text]